I haven't had a chance to drive another cobra other than mine, but mine is a 2003 and almost 50-60% of the time when I shift the car or push the clutch in to go into gear it makes a thud sound. Also there is a whinning sound when I put the car into neutral and let the clutch out. I have heard that sould before and I guess maybe these are just noisy transmissions in the cobras (not sure). So I am guessing the sound to be maybe the rear end or the u-joint. Its hard to describe, its not very loud, but it is very deep. Any help is appreciated. Thanks