I had the same shit happen to my 99 cobra.
I had a Flowmaster CB and when I installed the new BBk O/R X, it sounded just like my mufflers has metal loose in them. Terrible Ratttling noise coming right from them. NOT THE X. I put the car on a lift and started it, reved it up and followed he noise right to the mufflers. Not just one Muffler but both had the rattling noise. They to were new, less then 30 days old. Thinking they were 2 bad mufflers, I called Summit where I bought them and told them about it. Summit then sent me out a replacement CB over night. Awesome CS I must admit:biggthump. Put the car back on the lift, installed the new Flowmaster CB.
Fired the car back up. Didnt hear anything right away so I figured it was the mufflers. Took the car off the lift and left. Got about 2 miles away and did a few little rolling hits and the fricken rattle came back while down shifting. I was so FN pissed!:argue: I was like.. your FN kidding me, 2 sets of mufflers went bad. All my FN luck.
Opted to put the Factory catted H-pipe back on for shits and grins till I decide WTF I was going to buy or do next. To my disbelief, the rattle noise went away and the mufflers sounded as good as a Flowmaster will. Jumped on the car in every gear, down shifts and all. ZERO RATTLE!
Sold the X pipe on ebay with a unhappy review about its noise. It had about 40 miles on it and 100% flawless condtion. Kid who bought it emailed me saying that he to didnt lke the raspy noise it made on his 99 cobra and that it also made his Flowmasters sound broken. He to sold it on ebay as well and went to the ORH as did I.
If I was you, buy the Mac Prochamber and dump that X.